fourDNData

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see fourDNData.

4DN data package

Bioconductor version: 3.19

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("fourDNData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fourDNData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fourDNData")

fourDNData	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, SequencingData
Version	1.4.0
License	MIT + file LICENSE
Depends	R (>= 4.2)
Imports	BiocFileCache, HiCExperiment, GenomicRanges, IRanges, S4Vectors, utils, tools
System Requirements
URL	https://github.com/js2264/fourDNData
Bug Reports	https://github.com/js2264/fourDNData/issues

Suggests	rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	OHCA
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	fourDNData_1.4.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/fourDNData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/fourDNData
Package Short Url	https://bioconductor.org/packages/fourDNData/
Package Downloads Report	Download Stats