crisprScoreData
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see crisprScoreData.
Pre-trained models for the crisprScore package
Bioconductor version: 3.19
Provides an interface to access pre-trained models for on-target and off-target gRNA activity prediction algorithms implemented in the crisprScore package. Pre-trained model data are stored in the ExperimentHub database. Users should consider using the crisprScore package directly to use and load the pre-trained models.
Author: Jean-Philippe Fortin [aut, cre, cph]
Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>
citation("crisprScoreData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("crisprScoreData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("crisprScoreData")| crisprScoreData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data |
| Version | 1.8.0 |
| License | MIT + file LICENSE |
| Depends | ExperimentHub |
| Imports | AnnotationHub, utils |
| System Requirements | |
| URL | https://github.com/crisprVerse/crisprScoreData/issues |
| Bug Reports | https://github.com/crisprVerse/crisprScoreData |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | crisprScore |
| Imports Me | crisprVerse |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | crisprScoreData_1.8.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/crisprScoreData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/crisprScoreData |
| Package Short Url | https://bioconductor.org/packages/crisprScoreData/ |
| Package Downloads Report | Download Stats |