TargetScoreData
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see TargetScoreData.
TargetScoreData
Bioconductor version: 3.19
Precompiled and processed miRNA-overexpression fold-changes from 84 Gene Expression Omnibus (GEO) series corresponding to 6 platforms, 77 human cells or tissues, and 113 distinct miRNAs. Accompanied with the data, we also included in this package the sequence feature scores from TargetScanHuman 6.1 including the context+ score and the probabilities of conserved targeting for each miRNA-mRNA interaction. Thus, the user can use these static sequence-based scores together with user-supplied tissue/cell-specific fold-change due to miRNA overexpression to predict miRNA targets using the package TargetScore (download separately)
Author: Yue Li
Maintainer: Yue Li <yueli at cs.toronto.edu>
citation("TargetScoreData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TargetScoreData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TargetScoreData")| Processed human microRNA-overexpression data from GEO, and sequence information from TargetScan, and targetScore from TargetScore | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, RNASeqData, miRNAData |
| Version | 1.40.0 |
| License | GPL-2 |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | TargetScore, gplots |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | TargetScore |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TargetScoreData_1.40.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TargetScoreData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TargetScoreData |
| Package Short Url | https://bioconductor.org/packages/TargetScoreData/ |
| Package Downloads Report | Download Stats |