TENxXeniumData
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see TENxXeniumData.
Collection of Xenium spatial data by 10X genomics
Bioconductor version: 3.19
Collection of Xenium spatial transcriptomics datasets provided by 10x Genomics, formatted into the Bioconductor classes, the SpatialExperiment or SpatialFeatureExperiment (SFE), to facilitate seamless integration into various applications, including examples, demonstrations, and tutorials. The constructed data objects include gene expression profiles, per-transcript location data, centroid, segmentation boundaries (e.g., cell or nucleus boundaries), and image.
Author: Matineh Rahmatbakhsh [aut, cre], Monica Ge [aut]
Maintainer: Matineh Rahmatbakhsh <matinerb.94 at gmail.com>
citation("TENxXeniumData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TENxXeniumData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TENxXeniumData")| TENxXeniumData | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, SpatialData |
| Version | 1.0.0 |
| License | MIT + file LICENSE |
| Depends | ExperimentHub |
| Imports | SpatialExperiment, SpatialFeatureExperiment, BumpyMatrix, SummarizedExperiment, utils |
| System Requirements | |
| URL | https://github.com/mrbakhsh/TENxXeniumData |
| Bug Reports | https://github.com/mrbakhsh/TENxXeniumData/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TENxXeniumData_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TENxXeniumData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TENxXeniumData |
| Package Short Url | https://bioconductor.org/packages/TENxXeniumData/ |
| Package Downloads Report | Download Stats |