RegParallel
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see RegParallel.
Standard regression functions in R enabled for parallel processing over large data-frames
Bioconductor version: 3.19
In many analyses, a large amount of variables have to be tested independently against the trait/endpoint of interest, and also adjusted for covariates and confounding factors at the same time. The major bottleneck in these is the amount of time that it takes to complete these analyses. With RegParallel, a large number of tests can be performed simultaneously. On a 12-core system, 144 variables can be tested simultaneously, with 1000s of variables processed in a matter of seconds via 'nested' parallel processing. Works for logistic regression, linear regression, conditional logistic regression, Cox proportional hazards and survival models, and Bayesian logistic regression. Also caters for generalised linear models that utilise survey weights created by the 'survey' CRAN package and that utilise 'survey::svyglm'.
Author: Kevin Blighe [aut, cre], Sarega Gurudas [ctb], Jessica Lasky-Su [aut]
Maintainer: Kevin Blighe <kevin at clinicalbioinformatics.co.uk>
citation("RegParallel")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RegParallel")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RegParallel")| Standard regression functions in R enabled for parallel processing over large data-frames | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DiseaseModel, ExperimentData |
| Version | 1.22.0 |
| License | GPL-3 |
| Depends | doParallel, foreach, parallel, iterators, data.table, stringr, survival, arm, stats, utils, methods |
| Imports | |
| System Requirements | |
| URL | https://github.com/kevinblighe/RegParallel |
See More
| Suggests | RUnit, BiocGenerics, knitr, DESeq2, airway, magrittr, Biobase, GEOquery, biomaRt, survminer, survey, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RegParallel_1.22.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RegParallel |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RegParallel |
| Package Short Url | https://bioconductor.org/packages/RegParallel/ |
| Package Downloads Report | Download Stats |