MMDiffBamSubset

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see MMDiffBamSubset.

Example ChIP-Seq data for the MMDiff package

Bioconductor version: 3.19

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS

Author: Gabriele Schweikert

Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>

Citation (from within R, enter citation("MMDiffBamSubset")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MMDiffBamSubset")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ArrayExpress, ChIPSeqData, DNASeqData, ExperimentData, Genome, Mus_musculus_Data, StemCell
Version	1.40.0
License	LGPL
Depends
Imports
System Requirements
URL

Suggests	MMDiff2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	MMDiff2
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MMDiffBamSubset_1.40.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MMDiffBamSubset
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MMDiffBamSubset
Package Short Url	https://bioconductor.org/packages/MMDiffBamSubset/
Package Downloads Report	Download Stats