LRcellTypeMarkers

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see LRcellTypeMarkers.

Marker gene information for LRcell R Bioconductor package

Bioconductor version: 3.19

This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.

Author: Wenjing Ma [cre, aut]

Maintainer: Wenjing Ma <wenjing.ma at emory.edu>

Citation (from within R, enter citation("LRcellTypeMarkers")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LRcellTypeMarkers")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LRcellTypeMarkers")

LRcellTypeMarkers: Marker gene information for LRcell R Bioconductor package using Bioconductor's ExperimentHub	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, PackageTypeData, RNASeqData, SingleCellData
Version	1.12.0
License	MIT + file LICENSE
Depends	R (>= 4.1)
Imports	ExperimentHub
System Requirements
URL
Bug Reports	https://github.com/marvinquiet/LRcellTypeMarkers/issues

Suggests	LRcell, BiocStyle, knitr, rmarkdown, roxygen2, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	LRcell
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LRcellTypeMarkers_1.12.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/LRcellTypeMarkers
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LRcellTypeMarkers
Package Short Url	https://bioconductor.org/packages/LRcellTypeMarkers/
Package Downloads Report	Download Stats