BeadSorted.Saliva.EPIC
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see BeadSorted.Saliva.EPIC.
Illumina EPIC data on BeadSorted child saliva cells
Bioconductor version: 3.19
Raw data objects used to estimate saliva cell proportion estimates in ewastools. The FlowSorted.Saliva.EPIC object is constructed from samples assayed by Lauren Middleton et. al. (2021).
Author: Jonah Fisher [aut, cre], Kelly Bakulski [aut], Lauren Middleton [aut]
Maintainer: Jonah Fisher <jazzfish at umich.edu>
citation("BeadSorted.Saliva.EPIC")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BeadSorted.Saliva.EPIC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BeadSorted.Saliva.EPIC")| BeadSorted.Saliva.EPIC.html | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData |
| Version | 1.12.0 |
| License | GPL-3 |
| Depends | R (>= 4.1), minfi(>= 1.36.0), ExperimentHub |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BeadSorted.Saliva.EPIC_1.12.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BeadSorted.Saliva.EPIC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BeadSorted.Saliva.EPIC |
| Package Short Url | https://bioconductor.org/packages/BeadSorted.Saliva.EPIC/ |
| Package Downloads Report | Download Stats |