CHANGES IN VERSION 1.3.25
-------------------------
o Fix the abstract issue for edit module.
CHANGES IN VERSION 1.3.24
-------------------------
o Update the description.
CHANGES IN VERSION 1.3.23
-------------------------
o Add a hyperlink to package URL at footer.
CHANGES IN VERSION 1.3.22
-------------------------
o Fix the duplicated rownames.
CHANGES IN VERSION 1.3.21
-------------------------
o Add search button in the home page.
CHANGES IN VERSION 1.3.20
-------------------------
o Change the default waffle plot group to celltype.
CHANGES IN VERSION 1.3.19
-------------------------
o Update abstract in the admin edit tab.
CHANGES IN VERSION 1.3.18
-------------------------
o Add abstract parameter for createAppConfig
CHANGES IN VERSION 1.3.17
-------------------------
o Fix the issue if no ip location information available when update from the older version.
o add the possibility of the feature names to replace the rownames.
CHANGES IN VERSION 1.3.16
-------------------------
o Fix the missmatch UI and ID.
CHANGES IN VERSION 1.3.15
-------------------------
o Fix the no id column issue when update the database.
CHANGES IN VERSION 1.3.14
-------------------------
o Update the maxOptions from 6 to 50.
CHANGES IN VERSION 1.3.13
-------------------------
o Add groupby parameter for correlation for proportion plot.
CHANGES IN VERSION 1.3.12
-------------------------
o Add correlation for proportion plot.
CHANGES IN VERSION 1.3.11
-------------------------
o Add Wilcoxon test for violin plot.
CHANGES IN VERSION 1.3.10
-------------------------
o Add Chisq test for proportion.
CHANGES IN VERSION 1.3.9
-------------------------
o Fix some typos.
CHANGES IN VERSION 1.3.8
-------------------------
o Change dependence from hdf5r to rhdf5.
CHANGES IN VERSION 1.3.7
-------------------------
o Fix the wrong downloader handler in downloader module.
CHANGES IN VERSION 1.3.6
-------------------------
o Add downloader module.
CHANGES IN VERSION 1.3.5
-------------------------
o Add gene name map to sql database.
CHANGES IN VERSION 1.3.4
-------------------------
o Fix the issue of missing stats for cell numbers.
CHANGES IN VERSION 1.3.3
-------------------------
o Add user visit info and gene symbols into the sql database.
CHANGES IN VERSION 1.3.2
-------------------------
o Add dataset configuration into the sql database.
CHANGES IN VERSION 1.3.1
-------------------------
o Make it compatable with SeuratObject V5.
CHANGES IN VERSION 1.1.10
-------------------------
o Fix the download button for the explorer module.
CHANGES IN VERSION 1.1.9
-------------------------
o Fix the repeat retreive for reference by createAppConfig.
CHANGES IN VERSION 1.1.8
-------------------------
o Change the filepath for credential file.
CHANGES IN VERSION 1.1.7
-------------------------
o Fix the bug in scInit for datafolder.
CHANGES IN VERSION 1.1.6
-------------------------
o Fix the download button which download the fixed values.
o Add multiple subset buttons.
CHANGES IN VERSION 1.1.5
-------------------------
o List the available datasets by users privilege.
CHANGES IN VERSION 1.1.4
-------------------------
o Fix the bug if the data is removed where user is explorering.
CHANGES IN VERSION 1.1.3
-------------------------
o Fix the bug introduced by changing actionBution to checkboxInput for modBubbleHeatmap.
CHANGES IN VERSION 1.1.2
-------------------------
o Add multiple layer of violin plot
o Add sample order controls for stats plot
CHANGES IN VERSION 1.1.1
-------------------------
o Fix the bug that `coverage` function is not imported.
CHANGES IN VERSION 0.99.27
-------------------------
o Fix the subtitles for scATACseq data.
CHANGES IN VERSION 0.99.25
-------------------------
o Fix a typo when fixing the chromsome name style for scATACseq data.
CHANGES IN VERSION 0.99.24
-------------------------
o Add tracks for scATACseq data.
CHANGES IN VERSION 0.99.23
-------------------------
o Add title for ATAC plot buttons.
CHANGES IN VERSION 0.99.22
-------------------------
o Fix the issue if there is no reference.
CHANGES IN VERSION 0.99.21
-------------------------
o Fix the typo for `createDataset` function.
CHANGES IN VERSION 0.99.20
-------------------------
o Add zoom in and out for atac track plots.
CHANGES IN VERSION 0.99.19
-------------------------
o Update the atac track plots.
CHANGES IN VERSION 0.99.18
-------------------------
o Simplify the about module.
CHANGES IN VERSION 0.99.17
-------------------------
o Update documentation for cellgene VIP.
CHANGES IN VERSION 0.99.16
-------------------------
o fix the bug for cell index for waffleplot.
CHANGES IN VERSION 0.99.15
-------------------------
o fix the bug if no reference can be retrieved.
CHANGES IN VERSION 0.99.14
-------------------------
o fix the bug if no markers can be detected.
CHANGES IN VERSION 0.99.13
-------------------------
o remove aes_string.
CHANGES IN VERSION 0.99.12
-------------------------
o fix the dropdown names issue.
CHANGES IN VERSION 0.99.11
-------------------------
o add check/uncheck all to subset cells.
CHANGES IN VERSION 0.99.10
-------------------------
o fix the multiple loading.
CHANGES IN VERSION 0.99.9
-------------------------
o fix the long table in vignette.
CHANGES IN VERSION 0.99.8
-------------------------
o add app_path to app to fix the issue of missing files.
CHANGES IN VERSION 0.99.6
-------------------------
o add ATAC plots.
CHANGES IN VERSION 0.99.5
-------------------------
o Update R version dependency from 4.2.0 to 4.3.0
o remove 'CellChat', 'monocle3' and 'SeuratWrappers'.
o re-organize the files in extdata to script and add documentation.
o remove the `eval=FALSE` in vignettes and add `publish_folder` to scripts.
o change the parameter of `cat` to `category` for `helper1` function.
o remove `suppressWarnings/Messages`.
o re-format the code style to fit 80 line width and 4 spaces for line
indents.
o add function to save ATAC peaks.
CHANGES IN VERSION 0.99.4
-------------------------
o Update documentation.
CHANGES IN VERSION 0.99.3
-------------------------
o Fix the heatmap donwload button.
CHANGES IN VERSION 0.99.2
-------------------------
o Fix multiple notes.
CHANGES IN VERSION 0.99.1
-------------------------
o Prepare for release.