Changes in version 0.99.4 - Added persistent location to the script that generates the data objects Changes in version 0.99.3 - Working on the size and time constraints for the vignette/package to build and check on the BBS Changes in version 0.99.2 - Better specification of data objects format and location in the installed folder Changes in version 0.99.1 - This version contains the newly implemented changes as a response to the Bioconductor review. In brief, this includes: - renaming the functions (and parameters) to a more consistent style - reduction of the dependencies and runtime of checks/tests - more details on the exported data objects, and on the outputs (detailed in the vignette) - better structure for the vignette with cross-references among sections - modularization of some functions to avoid repetitive code - implementation of an API which is already framework-agnostic, to later accommodate e.g. edgeR/limma. Mainly, this implies the renaming of the dds to a more generic de_container, whereas the res_de parameter stays constant. For a full list of all changes implemented, please refer to the PR on the mosdef repository https://github.com/imbeimainz/mosdef/pull/11/ Changes in version 0.99.0 - Ready for submission to Bioconductor! Changes in version 0.4.0 - Using longtests to reduce checking time, as per Bioc guidelines Changes in version 0.3.0 - Reordered the functions thematically into a better file naming structure - Renaming of functions to better mirror their aim - e.g. topGOtable() -> run_topGO(), while also homogenizing the case Changes in version 0.2.0 - Vignette contains worked out examples for the whole package - Added the de_table_painter() function Changes in version 0.1.0 - Changed the examples to macrophage, fixed minor bugs and added some parameters to the buttonifier function Changes in version 0.0.2 - Added new features (go_volcano, input_checks, de_volcano). Styled up the package and maybe more Changes in version 0.0.1 - Added the main functionality Changes in version 0.0.0.9000 - Added a NEWS.md file to track changes to the package.