sigsquared

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see sigsquared.

Gene signature generation for functionally validated signaling pathways

Bioconductor version: 3.19

By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.

Author: UnJin Lee

Maintainer: UnJin Lee <unjin at uchicago.edu>

Citation (from within R, enter citation("sigsquared")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sigsquared")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigsquared")

SigSquared	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Software
Version	1.36.0
In Bioconductor since	BioC 3.1 (R-3.2) (9.5 years)
License	GPL version 3
Depends	R (>= 3.2.0), methods
Imports	Biobase, survival
System Requirements
URL

Suggests	RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sigsquared_1.36.0.tar.gz
Windows Binary (x86_64)	sigsquared_1.36.0.zip
macOS Binary (x86_64)	sigsquared_1.36.0.tgz
macOS Binary (arm64)	sigsquared_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sigsquared
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sigsquared
Bioc Package Browser	https://code.bioconductor.org/browse/sigsquared/
Package Short Url	https://bioconductor.org/packages/sigsquared/
Package Downloads Report	Download Stats