riboSeqR

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments

Bioconductor version: 3.19

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle [aut], Samuel Granjeaud [cre]

Maintainer: Samuel Granjeaud <samuel.granjeaud at inserm.fr>

Citation (from within R, enter citation("riboSeqR")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("riboSeqR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("riboSeqR")

biocViews	Genetics, RiboSeq, Sequencing, Software, Visualization
Version	1.38.0
In Bioconductor since	BioC 3.0 (R-3.1) (10 years)
License	GPL-3
Depends	R (>= 3.0.2), methods, GenomicRanges, abind
Imports	Rsamtools, IRanges, S4Vectors, baySeq, GenomeInfoDb, seqLogo
System Requirements
URL	https://github.com/samgg/riboSeqR
Bug Reports	https://github.com/samgg/riboSeqR/issues

Suggests	BiocStyle, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	riboSeqR_1.38.0.tar.gz
Windows Binary (x86_64)	riboSeqR_1.38.0.zip
macOS Binary (x86_64)	riboSeqR_1.38.0.tgz
macOS Binary (arm64)	riboSeqR_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/riboSeqR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/riboSeqR
Bioc Package Browser	https://code.bioconductor.org/browse/riboSeqR/
Package Short Url	https://bioconductor.org/packages/riboSeqR/
Package Downloads Report	Download Stats