rDGIdb
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see rDGIdb.
R Wrapper for DGIdb
Bioconductor version: 3.19
The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (https://www.dgidb.org/).
Author: Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel
Maintainer: Lars Bosshard <bosshard at nexus.ethz.ch>
citation("rDGIdb")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rDGIdb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rDGIdb")| Query DGIdb using R | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Annotation, FunctionalGenomics, Pharmacogenetics, Pharmacogenomics, ResearchField, Software, WorkflowStep |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | jsonlite, httr, methods, graphics |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rDGIdb_1.30.0.tar.gz |
| Windows Binary (x86_64) | rDGIdb_1.30.0.zip |
| macOS Binary (x86_64) | rDGIdb_1.30.0.tgz |
| macOS Binary (arm64) | rDGIdb_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rDGIdb |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rDGIdb |
| Bioc Package Browser | https://code.bioconductor.org/browse/rDGIdb/ |
| Package Short Url | https://bioconductor.org/packages/rDGIdb/ |
| Package Downloads Report | Download Stats |