ptairMS
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ptairMS.
Pre-processing PTR-TOF-MS Data
Bioconductor version: 3.19
This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and feature metadata (as a singl
Author: camille Roquencourt [aut, cre]
Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>
citation("ptairMS")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ptairMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ptairMS")
ptaiMS: Processing and analysis of PTR-TOF-MS data | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Alignment, MassSpectrometry, Metabolomics, PeakDetection, Preprocessing, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
License | GPL-3 |
Depends | |
Imports | Biobase, bit64, chron, data.table, doParallel, DT, enviPat, foreach, ggplot2, graphics, grDevices, ggpubr, gridExtra, Hmisc, methods, minpack.lm, MSnbase, parallel, plotly, rhdf5, rlang, Rcpp, shiny, shinyscreenshot, signal, scales, stats, utils |
System Requirements | |
URL | |
Bug Reports | https://github.com/camilleroquencourt/ptairMS/issues |
See More
Suggests | knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), ptairData, ropls |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ptairMS_1.12.0.tar.gz |
Windows Binary (x86_64) | ptairMS_1.12.0.zip |
macOS Binary (x86_64) | ptairMS_1.12.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/ptairMS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ptairMS |
Bioc Package Browser | https://code.bioconductor.org/browse/ptairMS/ |
Package Short Url | https://bioconductor.org/packages/ptairMS/ |
Package Downloads Report | Download Stats |