iSEEu
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see iSEEu.
iSEE Universe
Bioconductor version: 3.19
iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.
Author: Kevin Rue-Albrecht [aut, cre] 
, Charlotte Soneson [aut] , Federico Marini [aut] , Aaron Lun [aut] , Michael Stadler [ctb]
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
citation("iSEEu")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEu")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEu")| Panel universe | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | MIT + file LICENSE |
| Depends | iSEE, iSEEhex |
| Imports | methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce |
| System Requirements | |
| URL | https://github.com/iSEE/iSEEu |
| Bug Reports | https://github.com/iSEE/iSEEu/issues |
See More
| Suggests | scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | iSEEfier |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iSEEu_1.16.0.tar.gz |
| Windows Binary (x86_64) | iSEEu_1.16.0.zip |
| macOS Binary (x86_64) | iSEEu_1.16.0.tgz |
| macOS Binary (arm64) | iSEEu_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iSEEu |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSEEu |
| Bioc Package Browser | https://code.bioconductor.org/browse/iSEEu/ |
| Package Short Url | https://bioconductor.org/packages/iSEEu/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.19 | Source Archive |