hypeR

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see hypeR.

An R Package For Geneset Enrichment Workflows

Bioconductor version: 3.19

An R Package for Geneset Enrichment Workflows.

Author: Anthony Federico [aut, cre], Andrew Chen [aut], Stefano Monti [aut]

Maintainer: Anthony Federico <anfed at bu.edu>

Citation (from within R, enter citation("hypeR")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")

biocViews	Annotation, GeneSetEnrichment, Pathways, Software
Version	2.2.0
In Bioconductor since	BioC 3.9 (R-3.6) (5.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.6.0)
Imports	ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, htmltools, reshape2, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork, shiny, BiocStyle
System Requirements
URL	https://github.com/montilab/hypeR
Bug Reports	https://github.com/montilab/hypeR/issues

Suggests	tidyverse, devtools, testthat, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	hypeR_2.2.0.tar.gz
Windows Binary (x86_64)	hypeR_2.2.0.zip (64-bit only)
macOS Binary (x86_64)	hypeR_2.2.0.tgz
macOS Binary (arm64)	hypeR_2.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/hypeR
Bioc Package Browser	https://code.bioconductor.org/browse/hypeR/
Package Short Url	https://bioconductor.org/packages/hypeR/
Package Downloads Report	Download Stats