ggtreeSpace
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ggtreeSpace.
Visualizing Phylomorphospaces using 'ggtree'
Bioconductor version: 3.19
This package is a comprehensive visualization tool specifically designed for exploring phylomorphospace. It not only simplifies the process of generating phylomorphospace, but also enhances it with the capability to add graphic layers to the plot with grammar of graphics to create fully annotated phylomorphospaces. It also provide some utilities to help interpret evolutionary patterns.
Author: Guangchuang Yu [aut, cre, ths, cph] 
, Li Lin [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
citation("ggtreeSpace")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggtreeSpace")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ggtreeSpace")| Introduction to ggtreeSpace | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Phylogenetics, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (< 6 months) |
| License | Artistic-2.0 |
| Depends | |
| Imports | interp, ape, dplyr, GGally, ggplot2, grid, ggtree, phytools, rlang, tibble, tidyr, tidyselect, stats |
| System Requirements | |
| URL | https://github.com/YuLab-SMU/ggtreeSpace |
| Bug Reports | https://github.com/YuLab-SMU/ggtreeSpace/issues |
See More
| Suggests | knitr, prettydoc, rmarkdown, BiocStyle, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ggtreeSpace_1.0.0.tar.gz |
| Windows Binary (x86_64) | ggtreeSpace_1.0.0.zip |
| macOS Binary (x86_64) | ggtreeSpace_1.0.0.tgz |
| macOS Binary (arm64) | ggtreeSpace_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ggtreeSpace |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ggtreeSpace |
| Bioc Package Browser | https://code.bioconductor.org/browse/ggtreeSpace/ |
| Package Short Url | https://bioconductor.org/packages/ggtreeSpace/ |
| Package Downloads Report | Download Stats |