findIPs
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see findIPs.
Influential Points Detection for Feature Rankings
Bioconductor version: 3.19
Feature rankings can be distorted by a single case in the context of high-dimensional data. The cases exerts abnormal influence on feature rankings are called influential points (IPs). The package aims at detecting IPs based on case deletion and quantifies their effects by measuring the rank changes (DOI:10.48550/arXiv.2303.10516). The package applies a novel rank comparing measure using the adaptive weights that stress the top-ranked important features and adjust the weights to ranking properties.
Author: Shuo Wang [aut, cre] 
, Junyan Lu [aut]
Maintainer: Shuo Wang <wangsures at foxmail.com>
citation("findIPs")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("findIPs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("findIPs")| Introduction to package findIPs | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, Regression, Software, Survival |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (< 6 months) |
| License | GPL-3 |
| Depends | graphics, R (>= 4.4.0) |
| Imports | Biobase, BiocParallel, parallel, stats, SummarizedExperiment, survival, utils |
| System Requirements | |
| URL | https://github.com/ShuoStat/findIPs |
| Bug Reports | https://github.com/ShuoStat/findIPs |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | findIPs_1.0.0.tar.gz |
| Windows Binary (x86_64) | findIPs_1.0.0.zip |
| macOS Binary (x86_64) | findIPs_1.0.0.tgz |
| macOS Binary (arm64) | findIPs_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/findIPs |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/findIPs |
| Bioc Package Browser | https://code.bioconductor.org/browse/findIPs/ |
| Package Short Url | https://bioconductor.org/packages/findIPs/ |
| Package Downloads Report | Download Stats |