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diggit

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see diggit.

Inference of Genetic Variants Driving Cellular Phenotypes


Bioconductor version: 3.19

Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("diggit")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("diggit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diggit")
Using DIGGIT PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version 1.36.0
In Bioconductor since BioC 3.1 (R-3.2) (9.5 years)
License file LICENSE
Depends R (>= 3.0.2), Biobase, methods
Imports ks, viper(>= 1.3.1), parallel
System Requirements
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Suggests diggitdata
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package diggit_1.36.0.tar.gz
Windows Binary (x86_64) diggit_1.36.0.zip
macOS Binary (x86_64) diggit_1.36.0.tgz
macOS Binary (arm64) diggit_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/diggit
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/diggit
Bioc Package Browser https://code.bioconductor.org/browse/diggit/
Package Short Url https://bioconductor.org/packages/diggit/
Package Downloads Report Download Stats