alabaster.bumpy
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see alabaster.bumpy.
Save and Load BumpyMatrices to/from file
Bioconductor version: 3.19
Save BumpyMatrix objects into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Author: Aaron Lun [cre, aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("alabaster.bumpy")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.bumpy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("alabaster.bumpy")| Saving and loading BumpyMatrices | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | DataImport, DataRepresentation, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | MIT + file LICENSE |
| Depends | BumpyMatrix, alabaster.base |
| Imports | methods, rhdf5, Matrix, BiocGenerics, S4Vectors, IRanges |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, rmarkdown, knitr, testthat, jsonlite |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | alabaster |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | alabaster.bumpy_1.4.0.tar.gz |
| Windows Binary (x86_64) | alabaster.bumpy_1.4.0.zip |
| macOS Binary (x86_64) | alabaster.bumpy_1.4.0.tgz |
| macOS Binary (arm64) | alabaster.bumpy_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/alabaster.bumpy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alabaster.bumpy |
| Bioc Package Browser | https://code.bioconductor.org/browse/alabaster.bumpy/ |
| Package Short Url | https://bioconductor.org/packages/alabaster.bumpy/ |
| Package Downloads Report | Download Stats |