ModCon
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ModCon.
Modifying splice site usage by changing the mRNP code, while maintaining the genetic code
Bioconductor version: 3.19
Collection of functions to calculate a nucleotide sequence surrounding for splice donors sites to either activate or repress donor usage. The proposed alternative nucleotide sequence encodes the same amino acid and could be applied e.g. in reporter systems to silence or activate cryptic splice donor sites.
Author: Johannes Ptok [aut, cre] 
Maintainer: Johannes Ptok <Johannes.Ptok at posteo.de>
citation("ModCon")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ModCon")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ModCon")| Designing SD context with ModCon | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | AlternativeSplicing, FunctionalGenomics, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | data.table, parallel, utils, stats, R (>= 4.1) |
| Imports | |
| System Requirements | Perl |
| URL | https://github.com/caggtaagtat/ModCon |
See More
| Suggests | testthat, knitr, rmarkdown, dplyr, shinycssloaders, shiny, shinyFiles, shinydashboard, shinyjs |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ModCon_1.12.0.tar.gz |
| Windows Binary (x86_64) | ModCon_1.12.0.zip |
| macOS Binary (x86_64) | ModCon_1.12.0.tgz |
| macOS Binary (arm64) | ModCon_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ModCon |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ModCon |
| Bioc Package Browser | https://code.bioconductor.org/browse/ModCon/ |
| Package Short Url | https://bioconductor.org/packages/ModCon/ |
| Package Downloads Report | Download Stats |