HumanTranscriptomeCompendium
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see HumanTranscriptomeCompendium.
Tools to work with a Compendium of 181000 human transcriptome sequencing studies
Bioconductor version: 3.19
Provide tools for working with a compendium of human transcriptome sequences (originally htxcomp).
Author: Sean Davis, Vince Carey
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
citation("HumanTranscriptomeCompendium")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HumanTranscriptomeCompendium")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HumanTranscriptomeCompendium")| HumanTranscriptomeCompendium -- a cloud-resident collection of sequenced human transcriptomes | HTML | R Script |
| Reference Manual |
Details
| biocViews | Infrastructure, Software, Transcriptomics |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6) |
| Imports | shiny, ssrch, S4Vectors, SummarizedExperiment, utils, BiocManager |
| System Requirements | |
| URL |
See More
| Suggests | knitr, BiocStyle, beeswarm, tximportData, DT, tximport, dplyr, magrittr, BiocFileCache, testthat, rhdf5client, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HumanTranscriptomeCompendium_1.20.0.tar.gz |
| Windows Binary (x86_64) | HumanTranscriptomeCompendium_1.20.0.zip |
| macOS Binary (x86_64) | HumanTranscriptomeCompendium_1.20.0.tgz |
| macOS Binary (arm64) | HumanTranscriptomeCompendium_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/HumanTranscriptomeCompendium |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HumanTranscriptomeCompendium |
| Package Short Url | https://bioconductor.org/packages/HumanTranscriptomeCompendium/ |
| Package Downloads Report | Download Stats |