Menu

EGAD

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see EGAD.

Extending guilt by association by degree


Bioconductor version: 3.19

The package implements a series of highly efficient tools to calculate functional properties of networks based on guilt by association methods.

Author: Sara Ballouz [aut, cre], Melanie Weber [aut, ctb], Paul Pavlidis [aut], Jesse Gillis [aut, ctb]

Maintainer: Sara Ballouz <sarahballouz at gmail.com>

Citation (from within R, enter citation("EGAD")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EGAD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews FunctionalGenomics, FunctionalPrediction, GenePrediction, GraphAndNetwork, Network, NetworkEnrichment, Software, SystemsBiology
Version 1.32.0
In Bioconductor since BioC 3.3 (R-3.3) (8.5 years)
License GPL-2
Depends R (>= 3.5)
Imports gplots, Biobase, GEOquery, limma, impute, RColorBrewer, zoo, igraph, plyr, MASS, RCurl, methods
System Requirements
URL
See More
Suggests knitr, testthat, rmarkdown, markdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EGAD_1.32.0.tar.gz
Windows Binary (x86_64) EGAD_1.32.0.zip (64-bit only)
macOS Binary (x86_64) EGAD_1.32.0.tgz
macOS Binary (arm64) EGAD_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EGAD
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EGAD
Bioc Package Browser https://code.bioconductor.org/browse/EGAD/
Package Short Url https://bioconductor.org/packages/EGAD/
Package Downloads Report Download Stats