BioTIP

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see BioTIP.

BioTIP: An R package for characterization of Biological Tipping-Point

Bioconductor version: 3.19

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Yuxi (Jennifer) Sun <ysun11 at uchicago.edu>, Zhezhen Wang <zhezhen at uchicago.edu>, and X Holly Yang <xyang2 at uchicago.edu>

Citation (from within R, enter citation("BioTIP")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual	PDF

biocViews	GeneExpression, RNASeq, Sequencing, Software, Transcription
Version	1.18.0
In Bioconductor since	BioC 3.10 (R-3.6) (5 years)
License	GPL-2
Depends	R (>= 3.6)
Imports	igraph, cluster, psych, stringr, GenomicRanges, MASS, scran
System Requirements
URL	https://github.com/xyang2uchicago/BioTIP

Suggests	knitr, markdown, base, rmarkdown, ggplot2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)	BioTIP_1.18.0.zip
macOS Binary (x86_64)	BioTIP_1.18.0.tgz
macOS Binary (arm64)	BioTIP_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioTIP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioTIP
Bioc Package Browser	https://code.bioconductor.org/browse/BioTIP/
Package Short Url	https://bioconductor.org/packages/BioTIP/
Package Downloads Report	Download Stats