Changes in version 1.14                         

MsCoreUtils 1.14.1

  - Remove impute_mle2() since norm2 has been removed from CRAN (see
    [issue
    117])https://github.com/rformassspectrometry/MsCoreUtils/issues/117)).

MsCoreUtils 1.14.0

  - New Bioc release 3.18

                        Changes in version 1.13                         

MsCoreUtils 1.13.1

  - Add functions entropy and nentropy.

                        Changes in version 1.11                         

MsCoreUtils 1.11.6

  - Fix bug in impute_MinDet(MARGIN = 1) and add unit test.
  - Check that package is available and namespace is loaded adding
    stopifnot() when calling requireNamespace().

MsCoreUtils 1.11.5

  - Add function maxi to determine the maximal intensity value. This
    function returns NA_real_ instead of -Inf if all values are missing
    or if the length of the input parameter is 0.

MsCoreUtils 1.11.4

  - Check if parameter y is increasingly ordered in bin: issue #108.

MsCoreUtils 1.11.3

  - Add function sumi to sum intensity values with correct NA handling.

MsCoreUtils 1.11.2

  - Reimplement between in C (see issue #105).
  - Use symbols to call registered C methods for faster lookup (see PR
    #106 and Writing R extensions: Converting a package to use
    registration).
  - Documentation improvement: explicitly mention impute_mle2() in the
    MLE imputation paragraph.

MsCoreUtils 1.11.1

  - Add a MARGIN argument to (relevant) imputation functions to support
    (and make it explicit) along which dimensions (row or columns)
    imputation is performed.
  - New impute_mle2() function that uses norm2 (see issue #100).

MsCoreUtils 1.11.0

  - New Bioconductor 3.17 (devel) release

                        Changes in version 1.10                         

MsCoreUtils 1.10.0

  - New Bioconductor 3.16 (stable) release

                         Changes in version 1.9                         

MsCoreUtils 1.9.2

  - feat: imputation is compatible with HDF5Matrix objects
  - feat: normalization is compatible with HDF5Matrix objects
  - feat: matrix aggregation is compatible with HDF5Matrix objects
  - fix+feat: aggregate_by_matrix now correctly handles missing data and
    implements 'na.rm'
  - Fix rla/rowRla man page.

MsCoreUtils 1.9.1

  - Random forest imputation (using missForest) is now available
    (`method = "RF")

MsCoreUtils 1.9.0

  - New Bioc devel version

                         Changes in version 1.7                         

MsCoreUtils 1.7.5

  - Function bin gains parameter returnMids to choose whether or not bin
    mid-points should be returned in the result list.

MsCoreUtils 1.7.4

  - Fix ppm to always return a positive value (issue #94).

MsCoreUtils 1.7.3

  - Add citation.

MsCoreUtils 1.7.2

  - Use Matrix::colSums() by default to handle sparce 'Matrix' and
    'matrix' adjacency matrices.

MsCoreUtils 1.7.1

  - New aggregate_by_matrix() that uses an adjacency matrix to aggregate
    quantitative features.
  - Set colnames to the outputs of aggregate_by_matrix() and
    aggregate_by_vector() to make sure that these are always set and not
    reply on the underlying function.

MsCoreUtils 1.7.0

  - New Bioc devel version

                         Changes in version 1.5                         

Changes in 1.5.1

  - Add which.first and which.last.

Changes in 1.5.0

  - New Bioc devel version

                         Changes in version 1.3                         

Changes in 1.3.3

  - Add join_gnps and gnps to allow calculation of GNPS spectra
    similarity scores.

Changes in 1.3.2

  - Add rt2numeric(), rt2character() and formatRt().
  - New impute_fun() function for user-provide imputation function.

Changes in 1.3.1

  - Add Josep Badia Aparicio as a contributor

Changes in 1.3.0

  - New Bioc devel version

                         Changes in version 1.1                         

Changes in 1.1.7

  - Rewrite c("left", "right", "inner", "outer") join in C <2020-10-06
    Tue>.

Changes in 1.1.6

  - Rewrite closest in C <2020-09-24 Thu>.
  - Fix #65 and #66.

Changes in 1.1.5

  - Add ... to functions to join and compare peaks; see also #131.

Changes in 1.1.4

  - Change references to Feature to QFeatures <2020-07-14 Tue>
  - Ensure closest accept just argument tolerance of length 1 or
    length(x); see also #61, PR #62 <2020-08-07 Thu>.
  - The tolerance argument in closest should now be of length 1 or of
    length(x) (was length(table) before) <2020-08-20 Thu>.

Changes in 1.1.3

  - For an empty table closest and common return a vector of length x
    with NA or FALSE, respectively (instead of 1 and TRUE). Fixes #55
    <2020-06-18 Thu>.
  - closest and common ignore NA in table <2020-06-19 Fri>.
  - Fix rbindFill for single data.frame or DataFrame as input
    <2020-06-23 Tue>.

Changes in 1.1.2

  - New colCounts() aggregation function <2020-05-27 Wed>.

Changes in 1.1.1

  - Add some popular distance/similarity metrices: ndotproduct
    neuclidean navdist nspectraangle; see also PR #33.

  - Add deprecation note to dotproduct <2020-05-22 Fri>.

Changes in 1.1.0

  - Bioconductor devel version (Bioc 3.12)

                         Changes in version 1.0                         

Changes in 1.0.0.

  - Bioconductor release version (Bioc 3.11)

                        Changes in version 0.99                         

MsCoreUtils 0.99.3

  - Trigger build.

MsCoreUtils 0.99.2

  - Provide more comprehensive description.
  - Add vignette.

MsCoreUtils 0.99.1

  - Additional functions, and using Author@R to specify (unique)
    RforMassSpectrometry Package Maintainer.

MsCoreUtils 0.99.0

  - First release of MsCoreUtils with core function to get extreme
    values, grouping/matching, noise/smoothing, similarity measurements,
    various helper function, and function to process (impute and
    normalise) quantitative features.